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  "Author": "Mohsen Sadatsafavi [aut, cph], Amin Adibi [aut, cre], Kate\nJohnson [aut]",
  "Maintainer": "Amin Adibi <adibi@alumni.ubc.ca>",
  "Description": "Evaluation Platform in Chronic Obstructive Pulmonary\nDisease (EPIC) is a Discrete Event Simulation (DES) model that\nsimulates health outcomes of patients with Chronic Obstructive\nPulmonary Disease (COPD) based on demographics and\nindividual-level risk factors, based on the model published in\nSadatsafavi et al. (2019) <doi:10.1177/0272989X18824098>.",
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    "calc_event_stack_size",
    "calibrate_COPD_inc",
    "calibrate_explicit_mortality",
    "calibrate_explicit_mortality2",
    "calibrate_smoking",
    "copy_configs_to_user",
    "estimate_memory_required",
    "export_figures",
    "express_matrix",
    "get_agent_events",
    "get_agent_size_bytes",
    "get_all_events",
    "get_all_events_matrix",
    "get_available_memory",
    "get_default_settings",
    "get_errors",
    "get_event",
    "get_events_by_type",
    "get_input",
    "get_inputs",
    "get_list_elements",
    "get_n_events",
    "get_output",
    "get_output_ex",
    "get_progress",
    "get_runtime_stats",
    "get_sample_output",
    "get_settings",
    "get_smith",
    "get_user_config_dir",
    "list_available_jurisdictions",
    "mvrnormArma",
    "report_COPD_by_ctime",
    "report_exacerbation_by_time",
    "reset_model_input",
    "reset_user_configs",
    "resume",
    "sanity_check",
    "sanity_COPD",
    "set_input_var",
    "set_settings_var",
    "simulate",
    "test_case_detection",
    "user_config_exists",
    "validate_config",
    "validate_COPD",
    "validate_diagnosis",
    "validate_exacerbation",
    "validate_gpvisits",
    "validate_lung_function",
    "validate_medication",
    "validate_mortality",
    "validate_overdiagnosis",
    "validate_payoffs",
    "validate_population",
    "validate_smoking",
    "validate_survival",
    "validate_symptoms",
    "validate_treatment"
  ],
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      "title": "'epicR' package",
      "topics": [
        "epicR-package",
        "epicR"
      ]
    },
    {
      "page": "calc_event_stack_size",
      "title": "Calculate recommended event_stack_size for a given number of agents",
      "topics": [
        "calc_event_stack_size"
      ]
    },
    {
      "page": "calibrate_COPD_inc",
      "title": "Solves stochastically for COPD incidence rate equation.",
      "topics": [
        "calibrate_COPD_inc"
      ]
    },
    {
      "page": "calibrate_explicit_mortality",
      "title": "Calibrates explicit mortality",
      "topics": [
        "calibrate_explicit_mortality"
      ]
    },
    {
      "page": "calibrate_explicit_mortality2",
      "title": "Calibrates explicit mortality by Amin",
      "topics": [
        "calibrate_explicit_mortality2"
      ]
    },
    {
      "page": "calibrate_smoking",
      "title": "Calibrates smoking",
      "topics": [
        "calibrate_smoking"
      ]
    },
    {
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      "title": "Copy default configs to user directory",
      "topics": [
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      ]
    },
    {
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      "title": "epicR Configuration Management",
      "topics": [
        "config",
        "configuration",
        "epicR-config"
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    },
    {
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      "topics": [
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    {
      "page": "export_figures",
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      "topics": [
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      ]
    },
    {
      "page": "express_matrix",
      "title": "Express matrix.",
      "topics": [
        "express_matrix"
      ]
    },
    {
      "page": "get_agent_events",
      "title": "Returns all events of an agent.",
      "topics": [
        "get_agent_events"
      ]
    },
    {
      "page": "get_agent_size_bytes",
      "title": "Returns the size of agent struct in bytes",
      "topics": [
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      ]
    },
    {
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      "title": "Returns all events.",
      "topics": [
        "get_all_events"
      ]
    },
    {
      "page": "get_all_events_matrix",
      "title": "Returns a matrix containing all events",
      "topics": [
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      ]
    },
    {
      "page": "get_available_memory",
      "title": "Get available system memory (platform-specific)",
      "topics": [
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      ]
    },
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      "page": "get_default_settings",
      "title": "Exports default settings",
      "topics": [
        "get_default_settings"
      ]
    },
    {
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      "title": "Returns errors",
      "topics": [
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      ]
    },
    {
      "page": "get_event",
      "title": "Returns the events stack.",
      "topics": [
        "get_event"
      ]
    },
    {
      "page": "get_events_by_type",
      "title": "Returns all events of a certain type.",
      "topics": [
        "get_events_by_type"
      ]
    },
    {
      "page": "get_input",
      "title": "Returns a list of default model input values",
      "topics": [
        "get_input"
      ]
    },
    {
      "page": "get_inputs",
      "title": "Returns inputs",
      "topics": [
        "get_inputs"
      ]
    },
    {
      "page": "get_list_elements",
      "title": "Get list elements",
      "topics": [
        "get_list_elements"
      ]
    },
    {
      "page": "get_n_events",
      "title": "Returns total number of events.",
      "topics": [
        "get_n_events"
      ]
    },
    {
      "page": "get_output",
      "title": "Main outputs of the current run.",
      "topics": [
        "get_output"
      ]
    },
    {
      "page": "get_output_ex",
      "title": "Extra outputs from the model",
      "topics": [
        "get_output_ex"
      ]
    },
    {
      "page": "get_progress",
      "title": "Returns current simulation progress.",
      "topics": [
        "get_progress"
      ]
    },
    {
      "page": "get_runtime_stats",
      "title": "Returns run time stats.",
      "topics": [
        "get_runtime_stats"
      ]
    },
    {
      "page": "get_sample_output",
      "title": "Returns a sample output for a given year and gender.",
      "topics": [
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      ]
    },
    {
      "page": "get_settings",
      "title": "Returns current settings.",
      "topics": [
        "get_settings"
      ]
    },
    {
      "page": "get_smith",
      "title": "Returns agent Smith.",
      "topics": [
        "get_smith"
      ]
    },
    {
      "page": "get_user_config_dir",
      "title": "Get user config directory path",
      "topics": [
        "get_user_config_dir"
      ]
    },
    {
      "page": "init_session",
      "title": "Initializes a model. Allocates memory to the C engine.",
      "topics": [
        "init_session"
      ]
    },
    {
      "page": "list_available_jurisdictions",
      "title": "List available config jurisdictions",
      "topics": [
        "list_available_jurisdictions"
      ]
    },
    {
      "page": "mvrnormArma",
      "title": "Samples from a multivariate normal",
      "topics": [
        "mvrnormArma"
      ]
    },
    {
      "page": "report_COPD_by_ctime",
      "title": "Reports COPD related stats.",
      "topics": [
        "report_COPD_by_ctime"
      ]
    },
    {
      "page": "report_exacerbation_by_time",
      "title": "Reports exacerbation-related stats.",
      "topics": [
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      ]
    },
    {
      "page": "reset_model_input",
      "title": "Reset the cached model input",
      "topics": [
        "reset_model_input"
      ]
    },
    {
      "page": "reset_user_configs",
      "title": "Reset user configs to package defaults",
      "topics": [
        "reset_user_configs"
      ]
    },
    {
      "page": "resume",
      "title": "Resumes running of model.",
      "topics": [
        "resume"
      ]
    },
    {
      "page": "sanity_check",
      "title": "Basic tests of model functionality. Serious issues if the test does not pass.",
      "topics": [
        "sanity_check"
      ]
    },
    {
      "page": "sanity_COPD",
      "title": "Basic COPD test.",
      "topics": [
        "sanity_COPD"
      ]
    },
    {
      "page": "set_input_var",
      "title": "Sets input variables.",
      "topics": [
        "set_input_var"
      ]
    },
    {
      "page": "set_settings_var",
      "title": "Sets model settings.",
      "topics": [
        "set_settings_var"
      ]
    },
    {
      "page": "simulate",
      "title": "Convenience function: run simulation and return results",
      "topics": [
        "simulate"
      ]
    },
    {
      "page": "terminate_session",
      "title": "Terminates a session and releases allocated memory.",
      "topics": [
        "terminate_session"
      ]
    },
    {
      "page": "test_case_detection",
      "title": "Returns results of Case Detection strategies",
      "topics": [
        "test_case_detection"
      ]
    },
    {
      "page": "user_config_exists",
      "title": "Check if user config exists",
      "topics": [
        "user_config_exists"
      ]
    },
    {
      "page": "validate_config",
      "title": "Validate a config file",
      "topics": [
        "validate_config"
      ]
    },
    {
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      "title": "Returns results of validation tests for COPD",
      "topics": [
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    },
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      "title": "Returns results of validation tests for diagnosis",
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      "title": "Returns results of validation tests for exacerbation rates",
      "topics": [
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      "topics": [
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      ]
    },
    {
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      "title": "Returns results of validation tests for lung function",
      "topics": [
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      ]
    },
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      "title": "Returns results of validation tests for medication module.",
      "topics": [
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      ]
    },
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      "title": "Returns results of validation tests for mortality rate",
      "topics": [
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      "title": "Returns results of validation tests for overdiagnosis",
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      "title": "Returns results of validation tests for payoffs, costs and QALYs",
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      "title": "Returns simulated vs. predicted population table and a plot",
      "topics": [
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