{ "_id": "6a1e9f521d7bb097a0a70297", "Package": "accept", "Title": "The Acute COPD Exacerbation Prediction Tool (ACCEPT)", "Version": "1.1.1", "Authors@R": "c(\nperson(\"Amin\", \"Adibi\", email = \"adibi@alumni.ubc.ca\", role = c(\"aut\", \"cre\")),\nperson(\"Mohsen\", \"Sadatsafavi\", email = \"mohsen.sadatsafavi@ubc.ca\", role = c(\"aut\", \"cph\")),\nperson(\"Abdollah\", \"Safari\", email = \"asafari@mail.ubc.ca\", role = c(\"aut\")),\nperson(\"Ainsleigh\", \"Hill\", email = \"ainsleigh.hill@alumni.ubc.ca\", role = c(\"aut\")))", "Description": "Allows clinicians to predict the rate and severity of\nfuture acute exacerbation in Chronic Obstructive Pulmonary\nDisease (COPD) patients, based on the clinical prediction\nmodels published in Adibi et al. (2020)\n and Safari et al. (2022)\n.", "License": "GPL-3", "Encoding": "UTF-8", "LazyData": "true", "RoxygenNote": "7.3.3", "Language": "en-US", "Config/testthat/edition": "3", "Config/pak/sysreqs": "cmake make libuv1-dev libssl-dev libx11-dev", "Repository": "https://resplab.r-universe.dev", "Date/Publication": "2026-04-03 15:07:33 UTC", "RemoteUrl": "https://github.com/resplab/accept", "RemoteRef": "HEAD", "RemoteSha": "ddae28d62b0217210dd16435035109559ccb0c75", "NeedsCompilation": "no", "Packaged": { "Date": "2026-06-02 09:10:35 UTC", "User": "root" }, "Author": "Amin Adibi [aut, cre],\nMohsen Sadatsafavi [aut, cph],\nAbdollah Safari [aut],\nAinsleigh Hill [aut]", "Maintainer": "Amin Adibi ", "MD5sum": "4db26f48ebbd957f3cb8d5d62e15c578", "_user": "resplab", "_type": "src", "_file": "accept_1.1.1.tar.gz", "_fileid": "9317d1ba160e1765555db31b502160370aa9b77e966cfb85da0cc767da265f1a", "_filesize": 989641, "_sha256": "9317d1ba160e1765555db31b502160370aa9b77e966cfb85da0cc767da265f1a", "_created": "2026-06-02T09:10:35.000Z", "_published": "2026-06-02T09:16:02.789Z", "_distro": "noble", "_jobs": [ { "job": 79037563676, "time": 262, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "7353683144" }, { "job": 79037563716, "time": 267, "config": "linux-release-x86_64", "r": "4.6.0", "check": "OK", "artifact": "7353685230" }, { "job": 79037563751, "time": 181, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "7353654075" }, { "job": 79037563807, "time": 150, "config": "macos-release-arm64", "r": "4.6.0", "check": "OK", "artifact": "7353643562" }, { "job": 79036838694, "time": 257, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7353590009" }, { "job": 79037563691, "time": 178, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7353652791" }, { "job": 79037563719, "time": 221, "config": "windows-devel", "r": "4.7.0", "check": "OK", "artifact": "7353668023" }, { "job": 79037563683, "time": 208, "config": "windows-oldrel", "r": "4.5.3", "check": "OK", "artifact": "7353663975" }, { "job": 79037563688, "time": 198, "config": "windows-release", "r": "4.6.0", "check": "OK", "artifact": "7353660455" } ], "_buildurl": "https://github.com/r-universe/resplab/actions/runs/26809884827", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/resplab/accept", "_commit": { "id": "ddae28d62b0217210dd16435035109559ccb0c75", "author": "Amin Adibi ", "committer": "GitHub ", "message": "Merge pull request #20 from resplab/issue#19\n\naccept3 recalibrated equation update", "time": 1775228853 }, "_maintainer": { "name": "Amin Adibi", "email": "adibi@alumni.ubc.ca", "login": "aminadibi", "description": "", "uuid": 20497354 }, "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 4.0.0", "role": "Depends" }, { "package": "stats", "role": "Imports" }, { "package": "tidyselect", "version": ">= 1.2.0", "role": "Imports" }, { "package": "dplyr", "role": "Imports" }, { "package": "reldist", "role": "Imports" }, { "package": "splines", "role": "Imports" }, { "package": "tibble", "role": "Imports" }, { "package": "hardhat", "role": "Imports" }, { "package": "vctrs", "role": "Imports" }, { "package": "vetiver", "version": ">= 0.2.1", "role": "Imports" }, { "package": "jsonlite", "role": "Suggests" }, { "package": "plotly", "role": "Suggests" }, { "package": "spelling", "role": "Suggests" }, { "package": "testthat", "version": ">= 3.0.0", "role": "Suggests" } ], "_owner": "resplab", "_selfowned": true, "_usedby": 0, "_updates": [ { "week": "2025-23", "n": 5 }, { "week": "2025-44", "n": 6 }, { "week": "2025-46", "n": 2 }, { "week": "2026-10", "n": 2 }, { "week": "2026-14", "n": 1 } ], "_tags": [ { "name": "v1.0.2", "date": "2025-06-06" } ], "_stars": 10, "_contributors": [ { "user": "aminadibi", "count": 111, "uuid": 20497354 }, { "user": "ab-sa", "count": 24, "uuid": 10256202 }, { "user": "ahill187", "count": 15, "uuid": 23019211 }, { "user": "williamxu7", "count": 4, "uuid": 67845982 }, { "user": "yzr1996", "count": 2, "uuid": 70619133 }, { "user": "crystalleungee", "count": 1, "uuid": 156877654 } ], "_userbio": { "uuid": 49206837, "type": "organization", "name": "RESP", "description": "The Respiratory Evaluation Sciences Program (RESP) at the University of British Columbia" }, "_downloads": { "count": 250, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/accept" }, "_mentions": 1, "_devurl": "https://github.com/resplab/accept", "_searchresults": 17, "_rbuild": "4.6.0", "_assets": [ "extra/accept.html", "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/NEWS.html", "extra/NEWS.txt", "extra/readme.html", "extra/readme.md", "manual.pdf" ], "_homeurl": "https://github.com/resplab/accept", "_realowner": "resplab", "_cranurl": true, "_releases": [ { "version": "0.7.0", "date": "2019-08-08" }, { "version": "0.7.1", "date": "2020-03-18" }, { "version": "0.8.2", "date": "2021-06-15" }, { "version": "0.8.3", "date": "2021-06-18" }, { "version": "0.9.0", "date": "2022-03-22" }, { "version": "0.9.1", "date": "2022-07-15" }, { "version": "1.0.0", "date": "2023-02-06" }, { "version": "1.0.2", "date": "2025-06-05" } ], "_exports": [ "accept", "accept1", "accept2", "accept3", "plotExacerbations", "plotHeatMap", "predictCountProb", "set_openai_api_key", "show_openai_api_key" ], "_datasets": [ { "name": "samplePatients", "title": "Sample Patient Characteristics Inputs", "object": "samplePatients", "class": [ "tbl_df", "tbl", "data.frame" ], "fields": [ "ID", "male", "age", "smoker", "oxygen", "statin", "LAMA", "LABA", "ICS", "FEV1", "BMI", "SGRQ", "LastYrExacCount", "LastYrSevExacCount" ], "rows": 2, "table": true, "tojson": true } ], "_help": [ { "page": "accept", "title": "A flexible version of ACCEPT 2.0 model, which imputes predictors using MICE approach.", "topics": [ "accept" ] }, { "page": "accept1", "title": "Predicts COPD exacerbation rate by severity level based on Acute COPD Exacerbation Tool (ACCEPT)", "topics": [ "accept1" ] }, { "page": "accept2", "title": "Predicts COPD exacerbation rate by severity level based on the updated accept2 model, which improves accuracy in patients without an exacerbation history.", "topics": [ "accept2" ] }, { "page": "accept3", "title": "Predicts country-specific COPD exacerbation risk based on ACCEPT 3.0 model with external recalibration", "topics": [ "accept3" ] }, { "page": "handler_predict.accept_model", "title": "Model handler functions for API endpoint", "topics": [ "handler_predict.accept_model" ] }, { "page": "plotExacerbations", "title": "Creates bar graph comparing no treatment with azithromycin treatment", "topics": [ "plotExacerbations" ] }, { "page": "plotHeatMap", "title": "Creates heatmap of number of exacerbations", "topics": [ "plotHeatMap" ] }, { "page": "predict.accept_model", "title": "Model predictions", "topics": [ "predict.accept_model" ] }, { "page": "predictCountProb", "title": "Predicts probability of observing n exacerbations in the next year", "topics": [ "predictCountProb" ] }, { "page": "samplePatients", "title": "Sample Patient Characteristics Inputs", "topics": [ "samplePatients" ] }, { "page": "set_openai_api_key", "title": "Set OpenAI API key", "topics": [ "set_openai_api_key" ] }, { "page": "show_openai_api_key", "title": "View saved openAI API key", "topics": [ "show_openai_api_key" ] }, { "page": "vetiver_create_description.accept_model", "title": "Create a vetiver model object description", "topics": [ "vetiver_create_description.accept_model" ] }, { "page": "vetiver_create_meta.accept_model", "title": "Metadata constructors for `vetiver_model()` object", "topics": [ "vetiver_create_meta.accept_model" ] }, { "page": "vetiver_ptype.accept_model", "title": "Create a vetiver input data prototype", "topics": [ "vetiver_ptype.accept_model" ] } ], "_readme": "https://github.com/resplab/accept/raw/HEAD/README.md", "_rundeps": [ "abind", "askpass", "backports", "BH", "bit", "bit64", "bundle", "butcher", "callr", "cereal", "checkmate", "cli", "clipr", "cpp11", "crayon", "curl", "densEstBayes", "desc", "digest", "distributional", "dplyr", "farver", "fs", "generics", "ggplot2", "glue", "gridExtra", "gtable", "hardhat", "hms", "httr", "inline", "isoband", "jsonlite", "labeling", "lattice", "lifecycle", "lobstr", "loo", "magrittr", "MASS", "Matrix", "matrixStats", "mgcv", "mime", "nlme", "numDeriv", "openssl", "pillar", "pins", "pkgbuild", "pkgconfig", "posterior", "prettyunits", "processx", "progress", "ps", "purrr", "QuickJSR", "R6", "rapidoc", "rappdirs", "RColorBrewer", "Rcpp", "RcppArmadillo", "RcppEigen", "RcppParallel", "readr", "reldist", "rlang", "rstan", "rstantools", "S7", "scales", "sparsevctrs", "StanHeaders", "sys", "tensorA", "tibble", "tidyselect", "tzdb", "utf8", "vctrs", "vetiver", "viridisLite", "vroom", "whisker", "withr", "yaml" ], "_score": 5.32735893438633, "_indexed": true, "_nocasepkg": "accept", "_universes": [ "resplab", "aminadibi" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.1.1", "date": "2026-06-02T09:13:41.000Z", "distro": "noble", "commit": "ddae28d62b0217210dd16435035109559ccb0c75", "fileid": "2ddb73ae06bb77f48b44fe1a2fe9af9df9d8481087e9c59e6e2d22603a4e5239", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/resplab/actions/runs/26809884827" }, { "r": "4.6.0", "os": "linux", "version": "1.1.1", "date": "2026-06-02T09:13:54.000Z", "distro": "noble", "commit": "ddae28d62b0217210dd16435035109559ccb0c75", "fileid": "84c005e993b94cd4af1e7141855cc532f9ffdb5b1d22b9b1130ef82b5072802b", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/resplab/actions/runs/26809884827" }, { "r": "4.5.3", "os": "mac", "version": "1.1.1", "date": "2026-06-02T09:12:43.000Z", "commit": "ddae28d62b0217210dd16435035109559ccb0c75", "fileid": "b64c735876975e317abd794cb0524b4851a5170cac0d9d817d0242dc145d8ee9", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/resplab/actions/runs/26809884827" }, { "r": "4.6.0", "os": "mac", "version": "1.1.1", "date": "2026-06-02T09:12:31.000Z", "commit": "ddae28d62b0217210dd16435035109559ccb0c75", "fileid": "5176a6befe47a76630f1e1b7b83235355e4be4cc50559183ee01b13cb004c3c9", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/resplab/actions/runs/26809884827" }, { "r": "4.6.0", "os": "wasm", "version": "1.1.1", "date": "2026-06-02T09:14:00.000Z", "commit": "ddae28d62b0217210dd16435035109559ccb0c75", "fileid": "7c0c8d8de6cbd8cdbd05424df48d68d000baf1ab78fe3b078f674831c6808a60", "status": "success", "buildurl": "https://github.com/r-universe/resplab/actions/runs/26809884827" }, { "r": "4.7.0", "os": "win", "version": "1.1.1", "date": "2026-06-02T09:12:44.000Z", "commit": "ddae28d62b0217210dd16435035109559ccb0c75", "fileid": "53984ae29894c484f0e4f671aa1a2b13588991923b73b9699407d47d818679a5", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/resplab/actions/runs/26809884827" }, { "r": "4.5.3", "os": "win", "version": "1.1.1", "date": "2026-06-02T09:12:31.000Z", "commit": "ddae28d62b0217210dd16435035109559ccb0c75", "fileid": "188854814ccc1e6f4db893e3c498795b030b2413300c29b03fef6cdc691bd6ca", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/resplab/actions/runs/26809884827" }, { "r": "4.6.0", "os": "win", "version": "1.1.1", "date": "2026-06-02T09:12:27.000Z", "commit": "ddae28d62b0217210dd16435035109559ccb0c75", "fileid": "97a53bd9636930391fdddaffc1254b9476b20fe665896e15d1a3cd34a94c8fda", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/resplab/actions/runs/26809884827" } ] }